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MOLECULAR & CELLULAR MECHANISMS OF CARCINOGENESIS & MUTAGENESIS
MMG 991 Special Topics In Microbiology
BMB 960 Special Topics In Biochemistry
GEN 800 Genetics Seminar
CMB 800 Cell & Molecular Biology Seminar

Class 1   Jan 12    Introduction to DNA Repair, Mutagenesis and Recombination  by Veronica M. Maher.

Introduction to the Multi-Step Process of Carcinogenesis by J. Justin McCormick           

Class 2  Jan 19  DNA REPAIR:  PREVENTING MUTAGENESIS

Section 1)  Nucleotide Excision Repair: Photoproducts, Bulky Adducts-XP patients

Rick Tobey presenting

All Read

Lindahl, T. and R.D. Wood. Quality control by DNA repair. Science. 1999 286 (5446):1897-1905. Review.

Section  2)  Mismatch Repair; Strand Slippage: importance for cancer (HNPCC)

Eric Marrotte presenting

J. Jiricny, Eukaryotic mismatch repair: an update.  Mutat Res. 409:107-121, 1998. Review.R. Kolodner,  Biochemistry and genetics of eukaryotic mismatch repair. Genes Dev. 10:1433-1442, 1996 . Review.

Class 3  Jan 26  ADDITIONAL TYPES OF REPAIR AND MUTAGENESIS

Section 1)  Transcription-coupled repair

Neli Ragina Presenting

All Read

Mellon, I. , Spivak, G., Hanawalt, P.C.Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell, 51:241-9, 1987

Section 2)  XP Variant patients and Role of Pol eta

Samantha Taffner presenting

All Read

Yi Ching Wang, Veronica M. Maher, David L. Mitchell, and J. Justin McCormick . Evidence from Mutation Spectra that the UV Hypermutability of Xeroderma Pigmentosum Variant Cells Reflects Abnormal, Error-Prone Replication on a Template Containing Photoproducts. 1993 MCB, 13: 4276-4283.

All Read

W.G. McGregor, D. Wei, V.M. Maher, and J.J. McCormick.  Abnormal, error-prone bypass of photoproducts by xeroderma pigmentosum variant cell extracts results in extreme strand bias for the kinds of mutations induced by ultraviolet light.  Mol. Cell. Biol. 19, 147-154 (1999).

Class 4  Feb 2 TRANSLESION SYNTHESIS BY ERROR-PRONE

POLYMERASE ZETA & hRev1

(hRev3/hRev7) adn the ROle of hRev1

All Read

Z. Li et al., hREV3 is essential for error-prone translesion synthesis past UV or benzo[a]pyrene diol-epoxide-induced DNA lesions in human fibroblasts. Mut. Res. 510, 71-80. (2002).

All Read

Murakumo Y. The property of DNA polymerase zeta: REV7 is a putative protein involved in translesion DNA synthesis and cell cycle control. Mutat Res. 510:37-44 (2002).

Section 1)  Catalytic Subunit (hRev3)

Tak Ko Presenting

hRev7) McNally et al., Human homolog of S. cerevisiae Rev7, is involved in cell survival and the production of UV-induced mutations in human cells (2006). (Presenter Only)

Gibbs, P.E., McGregor, W.G., Maher, V.M., Nisson, P., Lawrence, C.W.  A human homolog of the Saccharomyces cerevisiae REV3 gene, which encodes the catalytic subunit of DNA polymerase zeta. Proc. Natl. Acad. Sci. U. S .A. 95:6876-80 (1998).

(Presenter Only)

Section 2)  hRev1 and its interaction with hRev3 and hRev7

Kannika Siripattarapravat presenting

hRev1)  Xi-De Wang, Yun Wang , Christopher W. Lawrence, Yoshiki Murakumo, J. Justin McCormick , and Veronica M. Maher. Expression of Exogenous hRev1 in Human Cells in which UV- or Benzo[a]pyrene Diol Epoxide-Induced Mutagenesis Has Been Virtually Eliminated by Antisense hREV1 Significantly Increases the Frequency of Mutations. (Presenter Only)

Gibbs, P.E., Wang, X.D., Li, Z., McManus, T.P., McGregor, W.G., Lawrence, C.W., Maher, V.M. The function of the human homolog of Saccharomyces cerevisiae REV1 is required for mutagenesis induced by UV light. Proc. Natl. Acad. Sci. U. S. A.  97:4186-91. (2000). (Presenter Only)

THE MULTI-STEP PROCESS OF CARCINOGENESIS 

Class   5  Feb   9           Chronic Myelogenous Leukemia

Deininger, M., Buchdunger, E., Druker, B.J. The development of imatinib as a therapeutic agent for chronic myeloid leukemia. Blood. 105:2640-53, (2005).

Ren,  R. Mechanisms of BCR-ABL in the pathogenesis of chronic myelogenous leukaemia. Nat Rev Cancer. 5, 172-83, 2005.

Tak Ko & Kannika Siripattarapravat presenting

Class   6  Feb 16          Skin Cancer p53

Backvall, H., Asplund, A., Gustafsson, A., Sivertsson, A., Lundeberg, J., Ponten, F.   Genetic tumor archeology: microdissection and genetic heterogeneity in squamous and basal cell carcinoma. Mutat Res. 571:65-79 (2005).

 
Hussein, M.R. Ultraviolet radiation and skin cancer: molecular mechanisms. J Cutan Pathol. 32:191-205 (2005).

Charis Chambers & Philip Ludwig presenting

 Class   7  Feb 23           Pancreatic Cancer   

Garcea, G., Neal. C.P., Pattenden, C.J., Steward, W..P, Berry, D.P. Molecular prognostic markers in pancreatic cancer: a systematic review. Eur J Cancer 41:2213-36 (2005). 

Samantha Taffner presenting/Justin McCormick presenting

Class   8  March 2         Cervical Cancer

Mark Zimmerman Presenting/Justin McCormick presenting

All Read

Scheurer, M.E., Tortolero-Luna, G., Adler-Storthz, K. Human papillomavirus infection: biology, epidemiology, and prevention. Int J Gynecol Cancer. 15:727-46 (2005).

Presenter Only

Clifford, G.M., Rana, R.K., Franceschi, S., Smith, J.S., Gough, G., Pimenta, J.M. Human papillomavirus genotype distribution in low-grade cervical lesions: comparison by geographic region and with cervical cancer. Cancer Epidemiol Biomarkers Prev.  14:1157-64 (2005).

Presenter Only

Kim, H.G., Yamal, J.M., Xu, X.C., Hu, W., Boiko, I., Linares, A., Vlastos, A.T., Atkinson, E.N., Malpica, A., Hittelman, W.N., Follen, M. Cervical chromosome 9 polysomy: validation and use as a surrogate endpoint biomarker in a 4-HPR chemoprevention trial. Gynecol Oncol. 99(Suppl 1):S32-7 (2005).

Presenter Only

Nair, S., Pillai, M.R. Human papillomavirus and disease mechanisms: relevance to oral and cervical cancers. Oral Dis. 11:350-9 (2005).

--------------Spring Break  March 6-10-----------------------

Class   9  March 16       Colon Cancer

Eric Marrotte presenting

All Read

Grady, W.M. Genomic instability and colon cancer. Cancer and Metastasis Reviews 23: 11-27, 2004.

Stem Cells & Cancer

The class presenting

Read any two of these papers to discuss “stem cells and cancer” as a group. 

Polyak, K. and  Hahn, William, C.  Roots and stems: stem cells in cancer – Nature Medicine 11 (March 2006) 296-300.

Hill, Richard P. Identifying Cancer Stem Cells in Solid Tumors: Case Not Proven.  Cancer Res 66 (Feb 15 2006) 1891-1896. 

Wicha, Max S, Liu, S. and Dontu, G. Cancer Stem Cells: An Old Idea- A Paradigm Shift.  Cancer Res 66 (Feb 15 2006) 1883-1890. 

Feinberg, A.P. Ohlsson, R. and Heinikoff, S. The epigenetic progenitor origin of human cancer.  Nature Reviews- Genetics  7 (Jan 2006)  21-33.

Class 10  March 23       1) Retinoblastoma    

All Read

Mittnacht, S. The retinoblastoma protein-from bench to bedside. Eur. J Cell Biol. 84:97-107, 2005.

Dyer, M.A. and Bremner, R. The search for the retinoblastoma cell of origin. Nat. Rev. Cancer. 5: 91-101, 2005.

  2) Tumor Suppressor Cells

KangAe Lee presenting

Zhu, L. Tumour suppressor retinoblastoma protein Rb: A transcriptional regulator. Eur. J Cancer. 41: 2415-2427, 2005.

All Read

Payne, S. R., and Kemp, C.J. Tumor suppressor genetics. Carcinogenesis. 26 (12): 2031-2045, 2005.

Rick Tobey presenting

Tucker, T. and Friedman, J.M., Pathogenesis of hereditary tumors: beyond the “two-hit” hypothesis. Clin.   Genet. 62: 345-357, 2002.

Paige, A.J.W. Biomedicine and Diseases: Review: Redefining tumour suppressor genes: exceptions to the two-hit hypothesis. CMLS, Cell. Mol. Life Sci. 60: 2147-2163, 2003.

Bignold, L. P. The cell-type-specificity of inherited predispositions to tumours: review and hypothesis. Cancer Letters. 216:127-146, 2004.

Class 11  March 30       Breast Cancer

All Read

Johnston, S.R.D. and Dowsett, M. Aromatase Inhibitors for Breast Cancer: Lessons from the Laboratory. Nature Reviews – Cancer 3: 821-831, 2003.

Smalley, M. and Ashworth, A.. Stem cells and Breast Cancer: A field in Transit. Nature Reviews – Cancer 3: 832-844, 2003.

Neli Ragina & Charles Miller presenting

-----------------------------------------April 6      NO CLASS------------------------------

HOW CELLS DEAL WITH DNA DAMAGE THAT COULD LEAD TO A CELL BECOMING MALIGNANT

Class 12  April 13  DAMAGE AVOIDANCE 

All Read

Z. Li, W. Xiao, J. J. McCormick and V. M. Maher. Identification of a protein essential for a major pathway used by human cells to avoid UV-induced DNA damage Proc. Natl. Acad. Sci., USA, 99 4459-4464,  2002.

Section 1)  Avoiding replication past fork-blocking damage

Mark Zimmerman Presenting

Section 2)  Replication past cross-links and DNA

Class 13  April 20  ROLE OF SUMOLYATION, UBIQUITINATION, AND PCNA

All Read

Helleday, T.  Pathways for mitotic homologous recombination in mammalian cells. Mutat. Res. 532, 103-15, 2003.

Freidberg, E.C., and Lehmann, A.R., and Fuchs, R. P.P. Trading places: how do DNA polymerases switch during translesion DNA synthesis? Mol. Cell  499-505, 2005.

Section 1) Philip Ludwig presenting      

Lehmann, A.R. Replication of damaged DNA by translesion synthesis in human cells. 579, 873-6, 2005.

Hoege, C., Pfander, B., Moldovan, G.L., Pyrowolakis, G., and Jentsch, S. RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature, 419, 135-41, 2002

Stelter, P, and  Ulrich, H.D. Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation. Nature, 425, 188-191, 2003.

Kannouche, P.L., Wing, J., and Lehmann, A.R. Interaction of human DNA polymerase eta with monoubiquitinated PCNA: a possible mechanism for the polymerase switch in response to DNA damage. Mol. Cell, 14, 491-500, 2004.

Section 2)   KangAe Lee presenting  

Nakanishi, K., Yang, Y.-G., Pierce, A.J.,  Taniguchi, T., Digweed, M., D’Andrea, A.,  Wang, Z.-Q., Jasin, M. Human Fanconi anemia monoubiquitination pathway promotes homologous DNA repair. Proc. Natl Acad Sci U.S.A. 102, 1110-5, 2005.

Niedernhofer, L.J., Lalai, A.S., and Hoeijmakers, J.H.  Fanconi anemia (cross) linked to DNA repair. Cell,  123, 1191-8, 2005.

Sarkar, S., Davies, A.A., Ulrich, H.D., and McHugh, P.J. DNA interstrand crosslink repair during G1 involves nucleotide excision repair and DNA polymerase zeta. 25, 1285-94, 2006.

Class 14  April 27  NON-HOMOLOGOUS END-JOINING

Section 1)      Charles Miller presenting

Section 2)   Charis Chambers presenting

Last Updated on 4/14/2006
By Bethany A. Heinlen
E-mail: heinlen@msu.edu
Copyright 2006 Carcinogenesis Laboratory, Michigan State University